Tools and Software

• Computational Research Tools, Resource Center, Institute for Computational Biomedicine, Cornell Weill Medical College. Comprehensive descriptions of tools, databases, etc.
• PDZBase - a manually curated protein-protein interaction database developed specifically for interactions involving PDZ domains. From the Institute for Computational Biomedicine, Cornell Weill Medical College.
• The Plant Proteome Database for arabidopsis thaliana and maize. At the Computational Biology Service Unit, Cornell.
• REDfly - a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). From the Center for Computational Research, University at Buffalo, SUNY.
• SigPath a web-based information management system that goes beyond existing programs, aiming to provide researchers with a wealth of information on complex biochemical networks that govern cells. Cornell Weill Medical College
  
• Software created by NYU Bioinformatics Group, Courant. Includes Segmenter, GOALIE, BioSpice Simpathica, Valis, NYU Simulation Trace Databased, NYU MicroArray Database
  
• VMD Plug-ins. VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. Cornell Weill Medical College

Centers

• Center for Computational Biology and Bioinformatics, Columbia University
• Center for Functional Genomics, University at Albany
  
• Center for Genomics and Systems Biology, New York University
• Computational Biology Center, Memorial Sloan-Kettering Cancer Research Center
  
• Computational Biology Service Unit, Cornell University
  
• Functional Genomics Center, University of Rochester
  
• Institute for Computational Biomedicine, Cornell Weill Medical College
  
• New York Center of Excellence in Bioinformatics and Life Sciences, University at Buffalo